The MacPerl version of the Perl programs can be downloaded as
hqx-encoded
archive. It includes all necessary libraries. MacPerl can be
optained via anonymous ftp.
The UNIX/Linux versions are listed in the table below. All files - except logo5mC - are in text-format. Use the left mouse button under Netscape and compatibles and the right mouse button under InternetExplorer to download the files.
A SVG generating version of the programs can be downloaded as tgz-encoded archive (courtesy of Anup Madan) methools_SVG_Archive.tgz. Needs GD::SVG.
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convert_bisulfite |
converts bisulfite generated sequences in 'filename' into seq1- and seq2-format |
PERL 5 | |
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EvalLog |
determines the errors of the PCR and/or the sequencing reaction |
PERL 5 | |
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InfoScan |
searches for conserved methylation patterns |
PERL 5 | |
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logo5mC2 |
generates graphical representation of methylated consensus sequences as LOGO (needs to be decompressed before installation) |
c++ | |
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Plot_CpGs_to_ps |
generates a graphical representation of methylation in CpG as postscript file (b/w version) |
PERL 5 | |
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Plot_CpGs_to_png |
generates a graphical representation of methylation in CpG as PNG file (color version) |
PERL 5 | |
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Plot_CpNpGs_to_png |
generates a graphical display of methylation in CpG and certain CpN as PNG file (color version) |
PERL 5 | |
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Plot_CpNpGs_to_png |
generates a graphical display of methylation in CpG and certain CpN as png file (color version) |
PERL 5 | |
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Plot_5mCpG_density_to_png |
plots the 5mCpG density distribution in individual sequences as png-image |
PERL 5 | |
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Plot_5mC_density_to_png |
plots the 5mC density distribution in individual sequences as png-image |
PERL 5 | |
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methylmx |
matrix-file for ClustalW. The use of this matrix usually minimizes additional manual editing. |
matrix | |
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autometh.sh |
tc-shell script that runs all programs consecutively. Usage: autometh.sh filename |
tc-shell | |
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example A |
example data set A (input file for convert_bisulfite.pl) |
FASTA | |
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example B |
example data set B |
FASTA | |
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infocont.tab |
example infocont.tab (table of frequencies and information content) |
table | |
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logo.ps |
example logo-output |
postscript | |