Genome Analysis of Lower Eukaryotes
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Original research


  1. Reichwald K, Lauber C, Nanda I, Kirschner J, Hartmann N, Schories S, Gausmann U, Taudien S, Schilhabel M, Szafranski K, Glöckner G, Schmid M, Cellerino A, Schartl M, Englert C, Platzer M (2009): High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research. Genome Biology 10(2):R16.

  2. Glöckner G*, Heidel AJ (2009): Centromere sequence and dynamics in Dictyostelium discoideum. Nucl. Acids Res., 29 Jan.

  3. Joseph, JM, Fey P, Ramalingam N, Liu XI, Rohlfs M, Noegel AA, Müller-Taubenberger A, Glöckner G, and Schleicher M (2008): The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms. PLoS ONE, 3(7):e2654

  4. Heidel AJ, Glöckner* G (2008): Mitochondrial Genome Evolution in the Social Amoebae. Mol. Biol. Evol. 25(7):1440-50

  5. 1)Krell A, Beszteri B, Dieckmann G, Glöckner G, Valentin K, Mock T, (2008): A new class of ice-binding proteins discovered in a salt-stress-induced cDNA library of the psychrophilic diatom Fragilariopsis cylindrus (Bacillariophyceae). European Journal of Phycology, 43, 423 - 433.

  6. Nowack ECM, Melkonian M, Glöckner G* (2008): Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes. Current Biology, 18(6):410-419.

  7. Glöckner G*, Golderer G, Werner-Felmayer G, Meyer S, Marwan W (2008): A first glimpse at the transcriptome of Physarum polycephalum. BMC Genomics, 9:6.

  8. Berg GM, Shrager J, Glöckner G, Arrigo KR, Grossmann AR (2008): Understanding nitrogen limitation in Aureococcus anophageferens (Pelagophyceae) through cDNA and qRT-PCR analysis. J of Phycology, accepted.

  9. Wodniok S, Simon A, Glöckner G, Becker B (2007): Gain and loss of polyadenylation signals during evolution of green algae. BMC Evol Biol, 7(1):65.

  10. Marin B, Nowack EC, Glöckner G, Melkonian M (2007): The ancestor of the Paulinella chromatophore obtained a carboxysomal operon by horizontal gene transfer from a Nitrococcus-like gamma-proteobacterium. BMC Evol Biol, 7(1):85.

  11. Glöckner G*, Albert C, Weinmann E, Jacobi S, Schunder E, Steinert M, Hacker J, Heuner K (2007): Identification and characterization of a new conjugation/ type IVA secretion system (trb/tra) of L. pneumophila Corby localized on a mobile genomic island. IJMM, in press.

  12. Taudien S, Ebersberger I, Glöckner G, Platzer M (2006): Should the draft chimpanzee sequence be finished? Trends Genet, 7:7.

  13. Siol O, Boutliliss M, Chung T, Glöckner G, Dingermann T, Winckler T (2006): Role of RNA Polymerase III Transcription Factors in the Selection of Integration Sites by the Dictyostelium Non-Long Terminal Repeat Retrotransposon TRE5-A. Mol Cell Biol, 26(22):8242-8251.

  14. Simon T, Glöckner G, Felder M, Melkonian M, Becker B: EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta) (2006): Implications for the evolution of green plants (Viridiplantae). BMC Plant Biology, 6(2).

  15. Nusbaum C, Mikkelsen TS, Zody MC, Asakawa S, Taudien S, Garber M, Kodira CD, Schueler MG, Shimizu A, Whittaker CA ..Glöckner G.. et al (2006): DNA sequence and analysis of human chromosome 8. Nature, 439(7074):331-335.

  16. Mock T, Krell A, Glöckner G, Kolukisaoglu Ü, Valentin K (2006): Cold acclimation-related genes in Fragilaropsis cylindrus. Journal of Phycology, 42:78-85.

  17. Glöckner G*, Schulte-Spechtel U, Schilhabel M, Felder M, Sühnel J, Wilske B, Platzer M (2006): Comparative genome analysis: Selection pressure on the Borrelia vls cassettes is essential for infectivity. BMC Genomics, 7:211.

  18. Wilkins A, Szafranski K, Fraser DJ, Bakthavatsalam D, Muller R, Fisher PR, Glöckner G, Eichinger L, Noegel AA, Insall RH (2005): The Dictyostelium genome encodes numerous RasGEFs with multiple biological roles. Genome Biol, 6(8):R68.

  19. Eichinger, L., J. A. Pachebat, G. Glöckner (shared 1st authorship), M.-A. Rajandream, R. Sucgang, M. Berriman, J. Song, R. Olsen, K. Szafranski, Q. Xu, B. Tunggal, S. Kummerfeld, M. Madera, B. A. Konfortov, P. Farbrother, A. T. Bankier, R. Lehmann, N. Hamlin, R. Davies, P. Gaudet, P. Fey , K. Pilcher, G. Chen, D. Saunders, E. Sodergren, P. Davis, N. Hall, X. Nie, A. Kehornou, C. Anjard, L. Hemphill, N. Bason, F. Rivero, B. Desany, E. Just, T. Morio, R. Rost, C. Churcher, J. Cooper, S. Haydock, N. van Driessche, A. Cronin, I. Goodhead, D. Muzny, M. Lu, D. Harper, R. Lindsay, H. Hauser, K. James, M. Quiles, M. B. Mohan, T. Saito, C. Buchrieser, A. Wardroper, M. Felder, M. Thangavelu, D. Johnson, A. Knights, H. Loulseged, K. Mungall, K. Oliver, C. Price, M.A. Quail, H. Urushihara, J. Hernandez, E. Rabbinowitsch, D. Steffen, M. Sanders, J. Ma, Y. Kohara, S. Sharp, M. Simmonds, A. Tivey, S. Sugano, B. White, D. Walker, J. Woodward, T. Winckler, Y. Tanaka, G. Shaulsky, M. Schleicher, G. Weinstock, A. Rosenthal, E.C. Cox, R.L. Chisholm, R. Gibbs, W.F. Loomis, M. Platzer, R.R. Kay, J. Williams, P. H. Dear, A.A. Noegel, B. Barrell, A. Kuspa (2005): The genome of the social amoeba Dictyostelium discoideum. Nature, 435:43-57.

  20. Romualdi, A., R. Siddiqui, G. Glöckner, R. Lehmann, J. Sühnel (2005): GenColors: a tool for accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness. Bioinformatics, 21(18):3669-71

  21. Ross, M. T., D. V. Grafham, A. J. Coffey, S. Scherer, K. McLay, D. Muzny, M. Platzer, G. R. Howell, C. Burrows, C. P.Bird, ..G. Glöckner …,… et al. (2005). The DNA sequence of the human X chromosome. Nature 434, 325-337

  22. Szafranski, K., R. Lehmann, G. Parra, R. Guigo, and G. Glöckner* (2005): Gene Organisation Features in A/T Rich Organisms. JME 60:90-98

  23. Felder, M., K. Szafranski, R. Lehmann, L. Eichinger, A.A. Noegel, M. Platzer, and G. Glöckner* (2005): DictyMOLD - a Dictyostelium discoideum genome browser database. Bioinformatics 21:696-697

  24. International Human Genome Sequencing Consortium (2004): Finishing the euchromatic sequence of the human genome. Nature 431:931-945

  25. Glöckner, G*., R. Lehmann, A. Romualdi, S. Pradella, U. Schulte-Spechtel, M. Schilhabel, U.B. Wilske, J. Sühnel, and M. Platzer (2004): Comparative Analysis of the Borrelia garinii Genome. NAR 32: 6038-6046

  26. Szafranski, K., T. Dingermann, G. Glöckner, and T. Winckler (2004): Template jumping by a Dictyostelium LINE reverse transcriptase created a SINE-like 5S rRNA retropseudogene Molecular and General Genomics 271:98-102

  27. Kollmar, M. and G. Glöckner* (2003): Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins. BMC Genomics 4:47

  28. Glöckner, G., L. Eichinger, K. Szafranski, J.A. Pachebat, A.T. Bankier, P.H. Dear, R. Lehmann, C. Baumgart, G. Parra, J.F. Abril, R. Guigo, K. Kumpf, Dictyostelium Sequencing Consortium, E. Cox, M.A. Quail, M. Platzer, A. Rosenthal, and A.A. Noegel (2002): Sequence and Analysis of Chromosome 2 of Dictyostelium discoideum. Nature. 418:79-85.

  29. Dame, G., G. Gloeckner, and C.F. Beck (2002): Knock-out of a putative transporter results in altered blue-light signalling in Chlamydomonas. Plant J. 31:577-87.

  30. Anjard, C., the Dictyostelium Sequencing Consortium, and W.F. Loomis (2002): Evolutionary Analysis of ABC Transporters of Dictyostelium discoideum. Eukaryotic Cell. 1:643-652.

  31. Stoyan, T., G. Gloeckner, S. Diekmann, and J. Carbon (2001): Multifunctional centromere binding factor 1 is essential for chromosome segregation in the human pathogenic yeast Candida glabrata. Mol Cell Biol. 21:4875-88.

  32. Rivero, F., H. Dislich, G. Glöckner, and A.A. Noegel (2001): The Dictyostelium discoideum family of Rho-related proteins. Nucleic Acids Res. 29:1068-79

  33. McPherson, J.D., ...... A. Rosenthal, G. Wen, M. Schilhabel, G. Gloeckner, G. Nyakatura, ...., and H. Lehrach (2001): A physical map of the human genome. Nature. 409:934-41.

  34. Glöckner, G.*, K. Szafranski, T. Winckler, T. Dingermann, M.A. Quail, E. Cox, L. Eichinger, A.A. Noegel, and A. Rosenthal (2001): The complex repeats of Dictyostelium discoideum. Genome Res. 11:585-94.

  35. International Genome Sequencing Consortium (2001): Initial sequencing and analysis of the human genome. Nature. 409:860-921.

  36. Taudien, S., A. Rump, M. Platzer, B. Drescher, R. Schattevoy, G. Gloeckner, M. Dette, C. Baumgart, J. Weber, U. Menzel, and A. Rosenthal (2000): RUMMAGE--a high-throughput sequence annotation system. Trends Genet. 16:519-20.

  37. Riboldi Tunnicliffe, G., G. Gloeckner, G.S. Elgar, S. Brenner, and A. Rosenthal (2000): Comparative analysis of the PCOLCE region in Fugu rubripes using a new automated annotation tool. Mamm Genome. 11:213-9.

  38. Momeni, P., G. Glöckner (shared 1st authorship), O. Schmidt, D. von Holtum, B. Albrecht, G. Gillessen-Kaesbach, R. Hennekam, P. Meinecke, B. Zabel, A. Rosenthal, B. Horsthemke, and H.J. Ludecke (2000): Mutations in a new gene, encoding a zinc-finger protein, cause tricho-rhino-phalangeal syndrome type I. Nat Genet. 24:71-74

  39. Mallon, A.M., M. Platzer, R. Bate, G. Gloeckner, M.R. Botcherby, G. Nordsiek, M.A. Strivens, P. Kioschis, A. Dangel, D. Cunningham, R.N. Straw, P. Weston, M. Gilbert, S. Fernando, K. Goodall, G. Hunter, J.S. Greystrong, D. Clarke, C. Kimberley, M. Goerdes, K. Blechschmidt, A. Rump, B. Hinzmann, C.R. Mundy, W. Miller, A. Poustka, G.E. Herman, M. Rhodes, P. Denny, A. Rosenthal, and S.D. Brown (2000): Comparative genome sequence analysis of the Bpa/Str region in mouse and Man. Genome Res. 10:758-75

  40. Glöckner, G.*, A. Rosenthal, and K. Valentin (2000): The structure and gene repertoire of an ancient red algal plastid genome. J Mol Evol. 51:382-90

  41. Szafranski, K., G. Glöckner, T. Dingermann, K. Dannat, A.A. Noegel, L. Eichinger, A. Rosenthal, and T. Winckler (1999): Non-LTR retrotransposons with unique integration preferences downstream of Dictyostelium discoideum tRNA genes. Mol Gen Genet. 262:772-80

  42. Glöckner, G.*, S. Scherer, R. Schattevoy, A. Boright, J. Weber, L.C. Tsui, and A. Rosenthal (1998): Large-scale sequencing of two regions in human chromosome 7q22: analysis of 650 kb of genomic sequence around the EPO and CUTL1 loci reveals 17 genes. Genome Res. 8:1060-73

  43. Heiss, N.S., G. Gloeckner, D. Bachner, P. Kioschis, S.M. Klauck, B. Hinzmann, A. Rosenthal, G.E. Herman, and A. Poustka (1997): Genomic structure of a novel LIM domain gene (ZNF185) in Xq28 and comparisons with the orthologous murine transcript. Genomics. 43:329-38

  44. Glöckner, G., and C.F. Beck (1997): Cloning and characterization of LRG5, a gene involved in blue light signaling in Chlamydomonas gametogenesis. Plant J. 12:677-83

  45. Gloeckner, G., and C.F. Beck (1995): Genes involved in light control of sexual differentiation in Chlamydomonas reinhardtii. Genetics. 141:937-43

  46. Buerkle, S., G. Gloeckner, and C.F. Beck (1993): Chlamydomonas mutants affected in the light-dependent step of sexual differentiation. Proc Natl Acad Sci U S A. 90:6981-5


*=corresponding author



Reviews, book chapters, etc.



  1. Steinert M, Heuner K, Buchrieser C, Albert-Weissenberger C, Glöckner G: Legionella pathogenicity: Genome structure, regulatory networks and the host cell response. Int J Med Microbiol 2007, 26:26.

  2. Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J: GenColors: Annotation and Comparative Genomics of Prokaryotes Made Easy. In: Methods in Molecular Biology, Comparative Genomics. Edited by Bergmann N, vol. 395: Humana Press; 2007: 75-96

  3. Steinert, M. and Glöckner, G. (2006): Model Host Systems. In: Pathogenomics. Edited by Dobrindt U, Hacker J: Wiley-VCH; 2006: 445-456

  4. Glöckner, G. (2005): Gemeinsam sind wir stark - was fügt Einzelzellen zu einem Ganzen? GenomExpress 3.05:14-15

  5. Winckler, T., K. Szafranski, G. Glöckner (2005): Transfer RNA gene-targeted integration: an adaptation of retrotransposable elements to survive in the compact Dictyostelium discoideum genome. Cytogen. Genome Res. 110:288-298

  6. Winckler, T., T. Dingermann, and G. Glöckner (2002): Dictyostelium mobile elements: strategies to amplify in a compact genome. Cell. Mol. Life Sci. 59:2097-2111

  7. Platzer, M., G. Glöckner, A. Rump, S. Taudien, M. Schilhabel, and A. Rosenthal (2001): Die Genomanalyse am IMB Jena. Biospektrum. 7:262-264.

  8. Eichinger, L., A.A. Noegel, and G. Glöckner (2001): Das Dictyostelium-Genomprojekt. Biospektrum. 7:229-231.

  9. Glöckner, G. (2000): Large Scale Sequencing and Analysis of AT Rich Eukaryote Genomes. Current Genomics. 1:289-299.